Stem-loop ptc-MIR6455

Accession

MI0022037

Description

Populus trichocarpa ptc-MIR6455 precursor miRNA

Sequence

auggccuaauuuugaguggauuucaaauguugaggauguuuuuugauuaaaguuguuaauuugaaauuaagggguucuaauacggaggaauuuacuguauguggauucugcugcugugaaucuguuguggaauuugaaauucuaaauugaaacuaaacauaaauaaauaaaauaacuucaaUCAAAUAGCAUCCUCAACAUUuuaaauucacucaaaauuaauccau
((((..(((((((((((((((((.((((((((((((((((.(((((((.((((((((..........(((.((((((.....(((.(((((((((.....))))))))).)))....)))))).)))(((((((...)))))))..........................)))))))).))))))).)))))))))))))))).)))))))))))))))))..))))

Structure

    cc                 c                u       a        ---------------------------------aauuugaaau   g      uaaua   a         u 
augg  uaauuuugaguggauuu aaauguugaggauguu uuugauu aaguuguu                                           uaa ggguuc     cgg ggaauuuac g
||||  ||||||||||||||||| |||||||||||||||| ||||||| ||||||||                                           ||| ||||||     ||| ||||||||| u
uacc  auuaaaacucacuuaaa uUUACAACUCCUACGA AAACUaa uucaauaa                                           guu ucuaag     guc ucuuaggug a
    ua                 u                U       c        aauaaauaaauacaaaucaaaguuaaaucuuaaaguuuaaggu   g      -uguc   g         u 

Annotation confidence Not enough data

Genome context

Unknown

Mature ptc-miR6455

• Accession: MIMAT0025265
• Description: Populus trichocarpa ptc-miR6455 mature miRNA
• Sequence: 182 - UCAAAUAGCAUCCUCAACAUU - 202
• Evidence: experimental ; miRNAseq [1]

References

1. PubMed ID: 22442676
   Deep annotation of Populus trichocarpa microRNAs from diverse tissue sets
   Puzey JR, Karger A, Axtell M, Kramer EM
   PLoS One (2012) 7:e33034