Stem-loop ptc-MIR6426b

Accession

MI0022031

Description

Populus trichocarpa ptc-MIR6426b precursor miRNA MIR6426

Gene
family

RF03872; MIR6426

Sequence

910 reads, 15.0 reads per million, 9 experiments

cgcguuuuuucuucuucuUCUUCUGCACUUCCAUGUCUCUauuguucacgugaacaGUGGAGACAUGGAAGUGAAGAagaagaagaagaaggagaaug
....((((((((((((((((((((.((((((((((((((((((((((....)))))))))))))))))))))).))))))))))))))))))))....

Structure

cgcg                    G                      a 
    uuuuuucuucuucuUCUUCU CACUUCCAUGUCUCUauuguuc c
    |||||||||||||||||||| ||||||||||||||||||||||  
    gaggaagaagaagaagaAGA GUGAAGGUACAGAGGUGacaag g
guaa                    A                      u 

Annotation confidence Medium

Genome context

CM000352.2: 11016524-11016621 [-]

Mature ptc-miR6426b-5p

• Accession: MIMAT0055687
• Description: Populus trichocarpa ptc-miR6426b-5p mature miRNA
• Sequence: 19 - UCUUCUGCACUUCCAUGUCUCU - 40
• Evidence: experimental ; unknown

Mature ptc-miR6426b-3p

• Accession: MIMAT0025259
• Description: Populus trichocarpa ptc-miR6426b-3p mature miRNA
• Sequence: 57 - GUGGAGACAUGGAAGUGAAGA - 77
• Evidence: experimental ; miRNAseq [1]

References

1. PubMed ID: 22442676
   Deep annotation of Populus trichocarpa microRNAs from diverse tissue sets
   Puzey JR, Karger A, Axtell M, Kramer EM
   PLoS One (2012) 7:e33034