Stem-loop ptc-MIR6439b

Accession

MI0022030

Description

Populus trichocarpa ptc-MIR6439b precursor miRNA

Gene family

MIPF0001526; MIR6439

Sequence

aaugcugaguaagaagccaaauaaagaAGCAGAAGCCAUCACUAGCGCcgcccuaauuaaaugcucaacccgucauuuugaucgcaacgaguuuucaucugcauaugggaagauuuucauggagaagaaugcuguagcauucaguuaagucugauugcaaaccucgugauguauugagcauuuacuuaauaugcugauggugacuucugccucuugauuuggugccugaaucaacauu
((((.(((...((..(((((((.((((.(((((((.(((((.(((((......(((.(((((((((((..((((((..........((.(((.(((.(((.((..(((((....))))))).))).))).))))).(((.((((......)))).))).......))))))..))))))))))).)))...))))).))))).))))))).)))).)))))))..))...))).))))

Structure

    c   gua  aa       a    A       C     C     Ccgccc   u           cc      --------------------uuugaucgca  g   u   a   g  ua     a 
aaug uga   ag  gccaaau aaga GCAGAAG CAUCA UAGCG      uaa uaaaugcucaa  cgucau                              ac agu uuc ucu ca  uggga g
|||| |||   ||  ||||||| |||| ||||||| ||||| |||||      ||| |||||||||||  ||||||                              || ||| ||| ||| ||  |||||  
uuac acu   uc  ugguuua uucu cgucuuc guggu gucgu      auu auuuacgaguu  guagug                              ug ucg aag aga gu  acuuu a
    a   aag  cg       g    c       a     a     ---aua   c           au      cuccaaacguuagucugaauugacuuacga  -   u   a   g  --     u 

Annotation confidence Not enough data

Genome context

CM000352.2: 71120-71357 [-]

Mature ptc-miR6439b

• Accession: MIMAT0025258
• Description: Populus trichocarpa ptc-miR6439b mature miRNA
• Sequence: 28 - AGCAGAAGCCAUCACUAGCGC - 48
• Evidence: experimental ; miRNAseq [1]

References

1. PubMed ID: 22442676
   Deep annotation of Populus trichocarpa microRNAs from diverse tissue sets
   Puzey JR, Karger A, Axtell M, Kramer EM
   PLoS One (2012) 7:e33034