Stem-loop ptc-MIR6440a

Accession

MI0022015

Description

Populus trichocarpa ptc-MIR6440a precursor miRNA

Gene family

MIPF0001406; MIR6440

Sequence

cgaguuaaaacucgaaaucaaucaaacucggucaaacucguaaaaucgaucuaauuuuaccgauuuuaacugaguuugaccGAGUUUGAUCGAUUUCGAGUUuuaaccug
...((((((((((((((((.((((((((((((((((((((((((((((............))))))))..)))))))))))))))))))).))))))))))))))))...

Structure

cga                a                    --        aucua 
   guuaaaacucgaaauc aucaaacucggucaaacucg  uaaaaucg     a
   |||||||||||||||| ||||||||||||||||||||  ||||||||      
   caauuUUGAGCUUUAG UAGUUUGAGccaguuugagu  auuuuagc     u
guc                C                    ca        cauuu 

Annotation confidence Not enough data

Genome context

CM000347.2: 1785258-1785367 [+]

Mature ptc-miR6440a

• Accession: MIMAT0025243
• Description: Populus trichocarpa ptc-miR6440a mature miRNA
• Sequence: 82 - GAGUUUGAUCGAUUUCGAGUU - 102
• Evidence: experimental ; miRNAseq [1]

References

1. PubMed ID: 22442676
   Deep annotation of Populus trichocarpa microRNAs from diverse tissue sets
   Puzey JR, Karger A, Axtell M, Kramer EM
   PLoS One (2012) 7:e33034