Stem-loop ptc-MIR6439a

Accession

MI0022014

Description

Populus trichocarpa ptc-MIR6439a precursor miRNA

Gene family

MIPF0001526; MIR6439

Sequence

ucauguaaagugaaugcugaguaagaagCCAAAUGAAGAAGCAGAAGCCaucacuagcgccgcccuaauuaaaugcucaacccgucauuuugaucgcaacgaguuuucaucugcauaugggaagauuuucauggagaagaaugcuguagcauucaguuaagucugauugcaaaccucgugauguauugagcauuuacuuaauaugcugauggugacuucugcuucuugauuuggugccugaaucaacauuaacuuuucauga
(((((.(((((.((((.(((...((..(((((((.((((((((((((.(((((.(((((......(((.(((((((((((..((((((..........((.(((.(((.(((.((..(((((....))))))).))).))).))))).(((.((((......)))).))).......))))))..))))))))))).)))...))))).))))).)))))))))))).)))))))..))...))).)))).))))).)))))

Structure

     u     g    c   gua  aa       G            C     c     ccgccc   u           cc      --------------------uuugaucgca  g   u   a   g  ua     a 
ucaug aaagu aaug uga   ag  gCCAAAU AAGAAGCAGAAG Cauca uagcg      uaa uaaaugcucaa  cgucau                              ac agu uuc ucu ca  uggga g
||||| ||||| |||| |||   ||  ||||||| |||||||||||| ||||| |||||      ||| |||||||||||  ||||||                              || ||| ||| ||| ||  |||||  
aguac uuuca uuac acu   uc  ugguuua uucuucgucuuc guggu gucgu      auu auuuacgaguu  guagug                              ug ucg aag aga gu  acuuu a
     u     a    a   aag  cg       g            a     a     ---aua   c           au      cuccaaacguuagucugaauugacuuacga  -   u   a   g  --     u 

Annotation confidence Not enough data

Genome context

CM000347.2: 1164654-1164915 [+]

Mature ptc-miR6439a

• Accession: MIMAT0025242
• Description: Populus trichocarpa ptc-miR6439a mature miRNA
• Sequence: 29 - CCAAAUGAAGAAGCAGAAGCC - 49
• Evidence: experimental ; miRNAseq [1]

References

1. PubMed ID: 22442676
   Deep annotation of Populus trichocarpa microRNAs from diverse tissue sets
   Puzey JR, Karger A, Axtell M, Kramer EM
   PLoS One (2012) 7:e33034