Stem-loop ptc-MIR6432

Accession

MI0022006

Description

Populus trichocarpa ptc-MIR6432 precursor miRNA

Literature search

1 open access papers mention ptc-MIR6432
(5 sentences)

Sequence

ggcggCGGCUCUAGAGAAAAAGAUGGguuuaggguuagguauuuuuuguauuuuuuuuuugauguugucaaaauuccccccccucuuuuguuugaguuguggacc
(((.(((((((.(((..((((((.(((....(((..((((((.....))))))...(((((((...)))))))...)))))).)))))).)))))))))).).))

Structure

  - g       U   GA      U   uuua   uuagguauuuuuuguauuuuuu       g 
gg c gCGGCUC AGA  AAAAGA GGg    ggg                      uuuugau  
|| | ||||||| |||  |||||| |||    |||                      ||||||| u
cc g uguugag uuu  uuuucu ccc    ccc                      aaaacug  
  a g       -   -g      c   ----   -------------------cuu       u 

Annotation confidence Not enough data

Genome context

CM000346.2: 11331570-11331674 [+]

Mature ptc-miR6432

• Accession: MIMAT0025233
• Description: Populus trichocarpa ptc-miR6432 mature miRNA
• Sequence: 6 - CGGCUCUAGAGAAAAAGAUGG - 26
• Evidence: experimental ; miRNAseq [1]

References

1. PubMed ID: 22442676
   Deep annotation of Populus trichocarpa microRNAs from diverse tissue sets
   Puzey JR, Karger A, Axtell M, Kramer EM
   PLoS One (2012) 7:e33034