Stem-loop ptc-MIR6430

Accession

MI0022004

Description

Populus trichocarpa ptc-MIR6430 precursor miRNA

Sequence

ccaaucuuagcuucuuguuguuuagcuUGAUGAUUAAUUGACUGCAAAagcaacucucuucuuuuuuuaggagaggaguugccuuugcagucaaguaaucaucaagcuaaauaccauaacugaggacugagguagaagg
...(((((((((((((((((((((((((((((((((.(((((((((((.(((((((((((((......)))))).))))))).))))))))))).))))))))))))))))))..))))..)))).)))))))......

Structure

---cca       -    --    --                  A           a       -      uu 
      aucuuag cuuc  uugu  uguuuagcuUGAUGAUUA UUGACUGCAAA gcaacuc ucuucu  u
      ||||||| ||||  ||||  |||||||||||||||||| ||||||||||| ||||||| ||||||   
      uggaguc ggag  aaua  auaaaucgaacuacuaau aacugacguuu cguugag agagga  u
ggaaga       a    uc    cc                  g           c       g      uu 

Annotation confidence Not enough data

Genome context

CM000337.2: 34025493-34025631 [+]

Mature ptc-miR6430

• Accession: MIMAT0025231
• Description: Populus trichocarpa ptc-miR6430 mature miRNA
• Sequence: 28 - UGAUGAUUAAUUGACUGCAAA - 48
• Evidence: experimental ; miRNAseq [1], Illumina [2]

References

1. PubMed ID: 22442676
   Deep annotation of Populus trichocarpa microRNAs from diverse tissue sets
   Puzey JR, Karger A, Axtell M, Kramer EM
   PLoS One (2012) 7:e33034


2. PubMed ID: 23570526
   Identification of drought-responsive and novel Populus trichocarpa microRNAs by high-throughput sequencing and their targets using degradome analysis
   Shuai P, Liang D, Zhang Z, Yin W, Xia X
   BMC Genomics (2013) 14:233