Stem-loop ptc-MIR6429

Accession

MI0022003

Description

Populus trichocarpa ptc-MIR6429 precursor miRNA

Sequence

auaacuucauuauagauaguuaacucaucaccagucaaugcaucacugcuagcacaugcaagcuuucaguugacauuuccuguuauauaaagaauuccucagaagaaaagcUAGUAGAAAUGCAUUGACUAGugaugaguuaauuucaguugauuugcuguuau
.................((((((((((((((.(((((((((((..((((((((.........((((.(..(((((.....)))))..)))))..(((....))).....))))))))..))))))))))).)))))))))))))).((((......))))....

Structure

--auaacuucauuauagau              c           ca        --------acaugcaag    c gu     u 
                   aguuaacucaucac agucaaugcau  cugcuagc                 cuuu a  ugaca u
                   |||||||||||||| |||||||||||  ||||||||                 |||| |  ||||| u
                   uuaauugaguaguG UCAGUUACGUA  GAUGAUcg                 gaaa u  auugu c
uauugucguuuaguugacu              A           AA        aaaagaagacuccuuaa    - au     c 

Annotation confidence Not enough data

Genome context

CM000337.2: 24230985-24231148 [-]

Mature ptc-miR6429

• Accession: MIMAT0025230
• Description: Populus trichocarpa ptc-miR6429 mature miRNA
• Sequence: 112 - UAGUAGAAAUGCAUUGACUAG - 132
• Evidence: experimental ; miRNAseq [1]

References

1. PubMed ID: 22442676
   Deep annotation of Populus trichocarpa microRNAs from diverse tissue sets
   Puzey JR, Karger A, Axtell M, Kramer EM
   PLoS One (2012) 7:e33034