Stem-loop ptc-MIR6428

Accession

MI0022002

Description

Populus trichocarpa ptc-MIR6428 precursor miRNA

Sequence

ggcacauugucgggcucguggucaguaggUCUGGCAACUCAUUAGACUCAUguuuguuuaggcucagcauacagcuaaacucaauuauguugggucugguagcuugccaaacucgcguccacuugggcucaacguguaguu
.((((((.((.((((((((((.(.((.(((.((((((((.((((((((((.....(((.((....(((.....)))...)).))).....)))))))))))).)))))).))).))).))))..)))))).)))))).)).

Structure

g  -    u  c      --    u a  a   C      -  C          Uguuu   u  gcuc   a 
 gc acau gu gggcuc  gugg c gu ggU UGGCAA CU AUUAGACUCA     guu ag    agc u
 || |||| || ||||||  |||| | || ||| |||||| || ||||||||||     ||| ||    ||| a
 ug ugug ca cucggg  cacc g cg uca accguu ga uggucugggu     uaa uc    ucg c
u  a    -  a      uu    u -  c   a      c  -          uguau   c  -aaa   a 

Annotation confidence Not enough data

Genome context

CM000337.2: 24008663-24008803 [-]

Mature ptc-miR6428

• Accession: MIMAT0025229
• Description: Populus trichocarpa ptc-miR6428 mature miRNA
• Sequence: 30 - UCUGGCAACUCAUUAGACUCAU - 51
• Evidence: experimental ; miRNAseq [1]

References

1. PubMed ID: 22442676
   Deep annotation of Populus trichocarpa microRNAs from diverse tissue sets
   Puzey JR, Karger A, Axtell M, Kramer EM
   PLoS One (2012) 7:e33034