Stem-loop ptc-MIR6428

Accession

MI0022002

Description

Populus trichocarpa ptc-MIR6428 precursor miRNA

Sequence

102 reads, 2.0 reads per million, 9 experiments

ggcacAUUGUCGGGCUCGUGGUCAGUAGGUcuggcaacucauuagacucauguuuguuuaggcucagcauacagcuaaacucaauuAUGUUGGGUCUGGUAGCUugccaaacucgcguccacuugggcucaacguguaguu
.((((((.((.((((((((((.(.((.(((.((((((((.((((((((((.....(((.((....(((.....)))...)).))).....)))))))))))).)))))).))).))).))))..)))))).)))))).)).

Structure

g  -    U  C      --    U A  A   c      -  c          uguuu   u  gcuc   a 
 gc acAU GU GGGCUC  GUGG C GU GGU uggcaa cu auuagacuca     guu ag    agc u
 || |||| || ||||||  |||| | || ||| |||||| || ||||||||||     ||| ||    ||| a
 ug ugug ca cucggg  cacc g cg uca accguU GA UGGUCUGGGU     uaa uc    ucg c
u  a    -  a      uu    u -  c   a      C  -          UGUAu   c  -aaa   a 

Annotation confidence Not enough data

Genome context

CM000337.2: 24008663-24008803 [-]

Mature ptc-miR6428-5p

• Accession: MIMAT0025229
• Description: Populus trichocarpa ptc-miR6428-5p mature miRNA
• Sequence: 6 - AUUGUCGGGCUCGUGGUCAGUAGGU - 30
• Evidence: experimental ; miRNAseq [1]

Mature ptc-miR6428-3p

• Accession: MIMAT0055676
• Description: Populus trichocarpa ptc-miR6428-3p mature miRNA
• Sequence: 87 - AUGUUGGGUCUGGUAGCU - 104
• Evidence: experimental ; unknown

References

1. PubMed ID: 22442676
   Deep annotation of Populus trichocarpa microRNAs from diverse tissue sets
   Puzey JR, Karger A, Axtell M, Kramer EM
   PLoS One (2012) 7:e33034