Stem-loop ptc-MIR6479

Accession

MI0021996

Description

Populus trichocarpa ptc-MIR6479 precursor miRNA

Sequence

130 reads, 3.0 reads per million, 7 experiments

uuaguuaagcgugggcuuuucucugcaaaauuugcaacucaaaguuuccuccagucguuggauuAUCAAUGAGAAUACUACUGCAaaaaauaguccaagaguuuauaauaccaacuaugaaaaaucaaaacagcaaucuuuugcaggaguauucucaUUGAGAAUCCAACAAUUAGAGaaagcuuugacacaaguuuugcaagaaaaaaggaaagucucaugucucaacuaa
.(((((.(((((((((((((((((((((((((((....(((((((((.(((.(((.((((((((.((((((((((((((.((((((((.((.((....((.((((((........))))))...))......)).)).)))))))).)))))))))))))).)))))))).))).))).)))))))))..)))))))))).))).....)))))))).)))).)).))))).

Structure

u     a  -    -        -----   -          caac         c   c   c        A              A        a  a  --ccaa  --g      aua 
 uaguu ag cgug ggcuuuuc     ucu gcaaaauuug    ucaaaguuu cuc agu guuggauu UCAAUGAGAAUACU CUGCAaaa au gu      ga   uuuaua   c
 ||||| || |||| ||||||||     ||| ||||||||||    ||||||||| ||| ||| |||||||| |||||||||||||| |||||||| || ||      ||   ||||||    
 aucaa uc guac cugaaagg     aga cguuuugaac    aguuucgaa GAG UUA CAACCUAA AGUUacucuuauga gacguuuu ua cg      cu   aaguau   c
a     c  u    u        aaaaa   a          --ac         a   A   A        G              g        c  a  acaaaa  aaa      caa 

Annotation confidence Low

Genome context

CM000345.2: 10675110-10675341 [+]

Mature ptc-miR6479-5p

• Accession: MIMAT0025222
• Description: Populus trichocarpa ptc-miR6479-5p mature miRNA
• Sequence: 65 - AUCAAUGAGAAUACUACUGCA - 85
• Evidence: experimental ; miRNAseq [1]

Mature ptc-miR6479-3p

• Accession: MIMAT0055675
• Description: Populus trichocarpa ptc-miR6479-3p mature miRNA
• Sequence: 158 - UUGAGAAUCCAACAAUUAGAG - 178
• Evidence: experimental ; unknown

References

1. PubMed ID: 22442676
   Deep annotation of Populus trichocarpa microRNAs from diverse tissue sets
   Puzey JR, Karger A, Axtell M, Kramer EM
   PLoS One (2012) 7:e33034