Accession
MI0021989
Description
Populus trichocarpa
ptc-MIR6425d precursor miRNA
Gene family
MIPF0001386;
MIR6425
Sequence
ggacucaugcauggcgaacaaguugagcuguaggguuaugaugaacaugcuaauuacaagcuaUUGUCUUCCAUGGAAUAGGCAGugauggcauuuguuuuauuuuccugagguggagaaaaacaaggagaccauaacacuguuauUCCAUGGAAGAUAAUGACUCGugguugacacuugaucucuccaguccaguucagauucaagcuagcugcugucu
((((.((.((.((((.......((((((((...((....(((.((..((.(((((((.((.((((((((((((((((((((.((((((((((.((((((((..(((((......)))))))))))))..).))))..))))))))))))))))))))))))).)).))))))).)).)).)))...))....))))))))......))))))))..))))
((((.((.((.((((.......((((((((...((....(((.((..((.(((((((.((.((((((((((((((((((((.((((((((((.((((((((..(((((......)))))))))))))..).))))..))))))))))))))))))))))))).)).))))))).)).)).)))...))....))))))))......))))))))..))))
Structure
-u u a gaacaag -uag uuau g ca c a c G -- - -a au ug
ggac ca gc uggc uugagcug gg gau aa ug uaauuac ag uaUUGUCUUCCAUGGAAUAG CAGug augg c uuuguuuu uuucc a
|||| || || |||| |||||||| || ||| || || ||||||| || |||||||||||||||||||| ||||| |||| | |||||||| |||||
ucug gu cg aucg gacuugac cc cua uu ac guugguG UC GUAAUAGAAGGUACCUuauu gucac uacc g gaacaaaa agagg g
uc - - -aacuua cuga -ucu g -c a C A - aa a ag -- ug
Annotation confidence
Not enough data
Do you think this miRNA is real?
Genome context
CM000337.2: 20479401-20479620 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from ptc-MIR6425d
| Name | Accession | Chromosome | Start | End | Strand | Confidence |
|---|
Database links
Mature ptc-miR6425d-5p
| Accession | MIMAT0025214 |
| Description | Populus trichocarpa ptc-miR6425d-5p mature miRNA |
| Sequence | 64 - UUGUCUUCCAUGGAAUAGGCAG - 85 |
| Evidence |
experimental
miRNAseq [1] |
Mature ptc-miR6425d-3p
| Accession | MIMAT0025215 |
| Description | Populus trichocarpa ptc-miR6425d-3p mature miRNA |
| Sequence | 147 - UCCAUGGAAGAUAAUGACUCG - 167 |
| Evidence |
experimental
miRNAseq [1] |
References
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