Stem-loop ptc-MIR6474

Accession

MI0021988

Description

Populus trichocarpa ptc-MIR6474 precursor miRNA

Sequence

55 reads, 1.0 reads per million, 9 experiments

gaaagccccuauuucaUGUUCAGAUCAGUAGAUAGCAuguaguuugcuugugguaaugguaccuugaucagacuacuugCUAUCUACGGAUCUGCACAGGUuuuu
(((((((.........(((.((((((.((((((((((.((((((((.((..((((....))))..)).)))))))).)))))))))).)))))).))))))))))

Structure

       ccuauuuca   U      A          u        c  gu    a 
gaaagcc         UGU CAGAUC GUAGAUAGCA guaguuug uu  ggua u
|||||||         ||| |||||| |||||||||| |||||||| ||  ||||  
uuuuUGG         ACA GUCUAG CAUCUAUCgu caucagac ag  ccau g
       ---------   C      G          u        u  uu    g 

Annotation confidence High

Genome context

CM000344.2: 207756-207860 [-]

Mature ptc-miR6474-5p

• Accession: MIMAT0025213
• Description: Populus trichocarpa ptc-miR6474-5p mature miRNA
• Sequence: 17 - UGUUCAGAUCAGUAGAUAGCA - 37
• Evidence: experimental ; miRNAseq [1], Illumina [2]

Mature ptc-miR6474-3p

• Accession: MIMAT0055672
• Description: Populus trichocarpa ptc-miR6474-3p mature miRNA
• Sequence: 80 - CUAUCUACGGAUCUGCACAGGU - 101
• Evidence: experimental ; unknown

References

1. PubMed ID: 22442676
   Deep annotation of Populus trichocarpa microRNAs from diverse tissue sets
   Puzey JR, Karger A, Axtell M, Kramer EM
   PLoS One (2012) 7:e33034


2. PubMed ID: 23570526
   Identification of drought-responsive and novel Populus trichocarpa microRNAs by high-throughput sequencing and their targets using degradome analysis
   Shuai P, Liang D, Zhang Z, Yin W, Xia X
   BMC Genomics (2013) 14:233