Stem-loop ptc-MIR6462c

Accession

MI0021982

Description

Populus trichocarpa ptc-MIR6462c precursor miRNA MIR6462

Gene
family

RF03792; MIR6462

Literature search

1 open access papers mention ptc-MIR6462c
(2 sentences)

Sequence

auggaugcgaccggcAAGGGACAAAAAUGGCAUAAGAgagauguacagggguagggaaggggaagagaaagaucgauaucuacgccccuucuuuuUCUCUUAUGCAUUUUUGUCCCucgccagucucgcccau
((((.((.(((.(((.(((((((((((((.(((((((((((............(((((((((...(((.(......).)))...))))))))))))))))))))))))))))))))).))).))).)).))))

Structure

    a  c   c   A             G           uguacaggggua         aag   a ga 
augg ug gac ggc AGGGACAAAAAUG CAUAAGAgaga            gggaagggg   aga a  u
|||| || ||| ||| ||||||||||||| |||||||||||            |||||||||   ||| |   
uacc gc cug ccg uCCCUGUUUUUAC GUAUUCUCUuu            uucuucccc   ucu u  c
    c  u   a   c             -           ------------         gca   a ag 

Annotation confidence Not enough data

Genome context

CM000341.2: 24280110-24280242 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from ptc-MIR6462c

Mature ptc-miR6462c-5p

• Accession: MIMAT0025205
• Description: Populus trichocarpa ptc-miR6462c-5p mature miRNA
• Sequence: 16 - AAGGGACAAAAAUGGCAUAAGA - 37
• Evidence: experimental ; miRNAseq [1], Illumina [2]

Mature ptc-miR6462c-3p

• Accession: MIMAT0025206
• Description: Populus trichocarpa ptc-miR6462c-3p mature miRNA
• Sequence: 96 - UCUCUUAUGCAUUUUUGUCCC - 116
• Evidence: experimental ; miRNAseq [1], Illumina [2]

References

1. PubMed ID: 22442676
   Deep annotation of Populus trichocarpa microRNAs from diverse tissue sets
   Puzey JR, Karger A, Axtell M, Kramer EM
   PLoS One (2012) 7:e33034


2. PubMed ID: 23570526
   Identification of drought-responsive and novel Populus trichocarpa microRNAs by high-throughput sequencing and their targets using degradome analysis
   Shuai P, Liang D, Zhang Z, Yin W, Xia X
   BMC Genomics (2013) 14:233