Stem-loop ptc-MIR6440b

Accession

MI0021964

Description

Populus trichocarpa ptc-MIR6440b precursor miRNA

Gene family

MIPF0001406; MIR6440

Sequence

ggguuaaaacucgaaaucagucacacucggucaaacucguaaaaucaguccgauuuuaccgauuuuaaccGAGUUUGAUCGAUUUCGAGUUuuaaccu
((((((((((((((((((.((((.(((((((.(((.((((((((((.....))))))).))).))).))))))).)))).))))))))))))))))))

Structure

                  a    c       c   c   -       a 
ggguuaaaacucgaaauc guca acucggu aaa ucg uaaaauc g
|||||||||||||||||| |||| ||||||| ||| ||| ||||||| u
uccaauuUUGAGCUUUAG UAGU UGAGcca uuu agc auuuuag c
                  C    U       a   u   c       c 

Annotation confidence Not enough data

Genome context

CM000339.2: 7164990-7165087 [-]

Mature ptc-miR6440b

• Accession: MIMAT0025183
• Description: Populus trichocarpa ptc-miR6440b mature miRNA
• Sequence: 71 - GAGUUUGAUCGAUUUCGAGUU - 91
• Evidence: experimental ; miRNAseq [1]

References

1. PubMed ID: 22442676
   Deep annotation of Populus trichocarpa microRNAs from diverse tissue sets
   Puzey JR, Karger A, Axtell M, Kramer EM
   PLoS One (2012) 7:e33034