Stem-loop ptc-MIR6458

Accession

MI0021963

Description

Populus trichocarpa ptc-MIR6458 precursor miRNA

Sequence

ggggaaauuagcuuaaacacccuauuguuugagcgugaggauacuuuucgcccugauuuuucauaaaauugcucuuugaccacgcucaaaagaucuugcaaggaauguaaguauuuucACGCUCAAAUAUAUAAGGUGUUuaacguaauuuaucu
(((.((((((..(((((((((.((((((((((((((((((((((((....((.(((....))).....(((((((((((......)).)))))....)))))).....))))))))))))))))))))).))).)))))))))..)))))).)))

Structure

   g      gc         c   -                     -uucg  cugauuuuucauaaaa    ----     -  cc 
ggg aaauua  uuaaacacc uau uguuugagcgugaggauacuu     cc                uugc    ucuuu ga  a
||| ||||||  ||||||||| ||| |||||||||||||||||||||     ||                ||||    ||||| ||   
ucu uuuaau  aauUUGUGG AUA AUAAACUCGCAcuuuuaugaa     gg                aacg    agaaa cu  c
   a      gc         A   U                     uguaa  ----------------    uucu     a  cg 

Annotation confidence Not enough data

Genome context

CM000339.2: 6330962-6331116 [+]

Mature ptc-miR6458

• Accession: MIMAT0025182
• Description: Populus trichocarpa ptc-miR6458 mature miRNA
• Sequence: 119 - ACGCUCAAAUAUAUAAGGUGUU - 140
• Evidence: experimental ; miRNAseq [1]

References

1. PubMed ID: 22442676
   Deep annotation of Populus trichocarpa microRNAs from diverse tissue sets
   Puzey JR, Karger A, Axtell M, Kramer EM
   PLoS One (2012) 7:e33034