miRBase entry: hme-mir-9a

Stem-loop hme-mir-9a


Accession
MI0021800
Description
Heliconius melpomene hme-mir-9a precursor miRNA


Sequence

ggcgcggcucgucucuuugguauccuagcuguaggcguguccucguacccUAAAGUUAUGGUACCGAAGUUAcgagccguaccgcgccuccaccgagcgcggccagucgcc
((((((((.((((((..(((............(((((((.................((((((..((......)).)))))).))))))))))..))).)))))).).))))

Structure
    - -   u   -   uu   uauccuagcugu       uccucguacccUAAAGU      AC  AA 
ggcg c ggc cgu cuc  ugg            aggcgug                 UAUGGU  CG  G
|||| | ||| ||| |||  |||            |||||||                 ||||||  ||   
ccgc g ccg gcg gag  acc            uccgcgc                 augccg  gc  U
    u a   -   c   cc   ------------       ----------------c      -a  AU 


Annotation confidence Not enough data
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Genome context
HE669612: 10280-10390 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from hme-mir-9a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature hme-miR-9a

Accession MIMAT0025003
Description Heliconius melpomene hme-miR-9a mature miRNA
Sequence 51 - UAAAGUUAUGGUACCGAAGUUA - 72
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22722851
    Butterfly genome reveals promiscuous exchange of mimicry adaptations among species
    "The Heliconius Genome Consortium"
    "Nature (2012) 487:94-98