Stem-loop gma-MIR395j

Accession

MI0021716

Description

Glycine max gma-MIR395j precursor miRNA

Literature search

15 open access papers mention gma-MIR395j
(68 sentences)

Sequence

98932 reads, 260.0 reads per million, 166 experiments

ucuguuggcugucccuuggAGUUCCUCUGAACGCUUCAUGuuagugagggggguagccaauguaaacugguacccauuauaagccuuauucaAUGAAGUGUUUGGGGGAACUCuuggguucaaacu
......(..((..(((.((((((((((((((((((((((...(((((((.(((((.(((........))))))))........)))))))..)))))))))))))))))))))).)))..))..).

Structure

ucuguu gc  uc   u                      Guu       -------g     g   aug 
      g  ug  ccu ggAGUUCCUCUGAACGCUUCAU   agugagg        gggua cca   u
      |  ||  ||| ||||||||||||||||||||||   |||||||        ||||| |||    
      c  ac  ggg uCUCAAGGGGGUUUGUGAAGUA   uuauucc        cccau ggu   a
-----u aa  uu   u                      -ac       gaauauua     -   caa 

Annotation confidence High

Genome context

chr1: 4832871-4832996 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from gma-MIR395j

Mature gma-miR395j-5p

• Accession: MIMAT0054402
• Description: Glycine max gma-miR395j-5p mature miRNA
• Sequence: 20 - AGUUCCUCUGAACGCUUCAUG - 40
• Evidence: experimental ; unknown

Mature gma-miR395j-3p

• Accession: MIMAT0024922
• Description: Glycine max gma-miR395j-3p mature miRNA
• Sequence: 93 - AUGAAGUGUUUGGGGGAACUC - 113
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22559273
   Genome organization and characteristics of soybean microRNAs
   Turner M, Yu O, Subramanian S
   BMC Genomics (2012) 13:169