Stem-loop gma-MIR393j

Accession

MI0021711

Description

Glycine max gma-MIR393j precursor miRNA

Literature search

22 open access papers mention gma-MIR393j
(49 sentences)

Sequence

1426109 reads, 2060.0 reads per million, 178 experiments

uguggguggagagUUCCAAAGGGAUCGCAUUGAUCUaauucuuguagaugccugaacuugcaaucuugaaucuugcaugcaauuccuggauuuagguuugcuuuaagggguucaguuauuggaUCAUGCGAUCCCUUAGGAACUUuccaucaau
....(((((((((((((.((((((((((((.((((((((..(((..(((.(((......((((.(((((((((..............))))))))).))))....))).))))))..)))))))))))))))))))).)))))))))))))...

Structure

ugug             A            U        uc   ua   g   gaacuu    u         ugcaug 
    gguggagagUUCC AAGGGAUCGCAU GAUCUaau  uug  gau ccu      gcaa cuugaaucu      c
    ||||||||||||| |||||||||||| ||||||||  |||  ||| |||      |||| |||||||||       
    cuaccuUUCAAGG UUCCCUAGCGUA CUagguua  gac  uug gga      cguu ggauuuagg      a
-uaa             A            -        uu   --   g   --auuu    u         uccuua 

Annotation confidence High

Genome context

chr16: 34388224-34388377 [+]

Mature gma-miR393j-5p

• Accession: MIMAT0024917
• Description: Glycine max gma-miR393j-5p mature miRNA
• Sequence: 14 - UUCCAAAGGGAUCGCAUUGAUCU - 36
• Evidence: experimental ; Illumina [1]

Mature gma-miR393j-3p

• Accession: MIMAT0054397
• Description: Glycine max gma-miR393j-3p mature miRNA
• Sequence: 124 - UCAUGCGAUCCCUUAGGAACUU - 145
• Evidence: experimental ; unknown

References

1. PubMed ID: 22559273
   Genome organization and characteristics of soybean microRNAs
   Turner M, Yu O, Subramanian S
   BMC Genomics (2012) 13:169