Stem-loop gma-MIR393h

Accession

MI0021709

Description

Glycine max gma-MIR393h precursor miRNA

Literature search

21 open access papers mention gma-MIR393h
(48 sentences)

Sequence

1425901 reads, 2055.0 reads per million, 178 experiments

uguggguggagagUUCCAAAGGGAUCGCAUUGAUCUaauucuuguagauguuuacacuugcaagcuuugcaugcaauuccuggauucagaugugauucagugguucacuuauuggaUCAUGCGAUCCCUUAGGAACUUuccaucaac
....(((((((((((((.((((((((((((.((((((((...(((((....))))).(((((.((...)).))))).((((((((.((....)))))))).)).......)))))))))))))))))))).)))))))))))))...

Structure

ugug             A            U        ucuuguagauguuuacacuugcaagcuuugcaugcaau  -      u  g 
    gguggagagUUCC AAGGGAUCGCAU GAUCUaau                                      uc cuggau ca a
    ||||||||||||| |||||||||||| ||||||||                                      || |||||| ||  
    cuaccuUUCAAGG UUCCCUAGCGUA CUagguua                                      gg gacuua gu u
-caa             A            -        -------------------------------uucacuu  u      -  g 

Annotation confidence High

Genome context

chr9: 34250214-34250360 [+]

Mature gma-miR393h-5p

• Accession: MIMAT0024915
• Description: Glycine max gma-miR393h-5p mature miRNA
• Sequence: 14 - UUCCAAAGGGAUCGCAUUGAUCU - 36
• Evidence: experimental ; Illumina [1]

Mature gma-miR393h-3p

• Accession: MIMAT0054395
• Description: Glycine max gma-miR393h-3p mature miRNA
• Sequence: 117 - UCAUGCGAUCCCUUAGGAACUU - 138
• Evidence: experimental ; unknown

References

1. PubMed ID: 22559273
   Genome organization and characteristics of soybean microRNAs
   Turner M, Yu O, Subramanian S
   BMC Genomics (2012) 13:169