miRBase entry: ppe-MIR6285

Stem-loop ppe-MIR6285


Accession
MI0021653
Description
Prunus persica ppe-MIR6285 precursor miRNA


Sequence

aagacaagucUAGUGAAGUUUGAAUUAGGGCUuagccaaucuaagguaaagcccaauuuucauuucacuaggcucaucuua
((((..(((((((((((((..(((((.((((((.(((.......))).)))))))))))..)))))))))))))..)))).

Structure
-    ca             UU     A      a   aa 
 aaga  agucUAGUGAAGU  GAAUU GGGCUu gcc  u
 ||||  |||||||||||||  ||||| |||||| |||  c
 uucu  ucggaucacuuua  uuuaa cccgaa ugg  u
a    ac             cu     -      a   aa 


Annotation confidence Not enough data
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Comments
Gao et al. identified small RNAs by sequencing in Prunus mume [1]. The reads were mapped to the Prunus persica genome. This entry represents the Prunus persica sequence, but the evidence for mature RNA expression is from Prunus mume.

Genome context
chrG8: 17429089-17429169 [-]

Database links

Mature ppe-miR6285

Accession MIMAT0027316
Description Prunus persica ppe-miR6285 mature miRNA
Sequence 11 - UAGUGAAGUUUGAAUUAGGGCU - 32
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22863067
    High-throughput sequencing of small RNAs and analysis of differentially expressed microRNAs associated with pistil development in Japanese apricot
    Gao Z, Shi T, Luo X, Zhang Z, Zhuang W, Wang L
    BMC Genomics (2012) 13:371