Stem-loop ppe-MIR319a

Accession

MI0021637

Description

Prunus persica ppe-MIR319a precursor miRNA

Literature search

4 open access papers mention ppe-MIR319a
(5 sentences)

Sequence

aauggccauggggagcuccuuuugguccaauacagagggcugagguguggcuagagcugucaucucaugcauucggcuaccccuuaauauuucuaauuaacccuccugcuccugcugugccuguguugcacaauuauucuuaugaaaauguuaagguuuagccuggugcauggugugggagcaacuccuuccgcgcacuuagcccacccaUUGGACUGAAGGGAGCUCCCgcaucacauc
.(((...((((((((((((((((((((((((.....((((((((((((((...(((((.((((.(((((((((.(((((..(((((((((((...............((....))(((((.......))))).....((....)))))))))))))..))))).))))))))).)))).)))...))...)))))).))))))))....))))))))))))))))))))).)))..))).

Structure

a   gcc   -                     acaga        -      cua  ---   g    c         c     cc           cuaauuaacccuccugcuccugc     cu 
 aug   aug gggagcuccuuuugguccaau     gggcugag gugugg   ga   gcu ucau ucaugcauu ggcua  ccuuaauauuu                       ugugc  g
 |||   ||| |||||||||||||||||||||     |||||||| ||||||   ||   ||| |||| ||||||||| |||||  |||||||||||                       |||||  u
 uac   uac CCCUCGAGGGAAGUCAGGUUa     cccgauuc cgcgcc   cu   cga ggug gguacgugg ccgau  ggaauuguaaa                       acacg  g
c   -ac   g                     -ccca        a      uuc  caa   g    u         u     uu           ----------aguauucuuauua     uu 

Annotation confidence Not enough data

Comments

Gao et al. identified small RNAs by sequencing in Prunus mume [1]. The reads were mapped to the Prunus persica genome. This entry represents the Prunus persica sequence, but the evidence for mature RNA expression is from Prunus mume.

Genome context

chrG5: 17215362-17215601 [+]

Mature ppe-miR319a

• Accession: MIMAT0027300
• Description: Prunus persica ppe-miR319a mature miRNA
• Sequence: 211 - UUGGACUGAAGGGAGCUCCC - 230
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22863067
   High-throughput sequencing of small RNAs and analysis of differentially expressed microRNAs associated with pistil development in Japanese apricot
   Gao Z, Shi T, Luo X, Zhang Z, Zhuang W, Wang L
   BMC Genomics (2012) 13:371