miRBase entry: ppe-MIR6273

Stem-loop ppe-MIR6273


Accession
MI0021636
Description
Prunus persica ppe-MIR6273 precursor miRNA


Sequence

cugcaaaccaaaaaaaaaaaaaaaaaaucauccagcauuccuuuuacagcuauuuacugauucaguaaguaguaccauaaggAAUGCAGCAUGAUUUUUUUUUugcuuguugauuuguuaaau
..(((((.(((......((((((((((((((.(.(((((((((.....(((((((((((...))))))))))).....))))))))).).)))))))))))))).....))).))))).....

Structure
---cu     c   aaaaaa              c a         uuaca           a 
     gcaaa caa      aaaaaaaaaaucau c gcauuccuu     gcuauuuacug  
     ||||| |||      |||||||||||||| | |||||||||     ||||||||||| u
     uguuu guu      uUUUUUUUUUAGUA G CGUAAggaa     ugaugaaugac  
uaaau     a   -guucg              C A         uacca           u 


Annotation confidence Not enough data
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Comments
Gao et al. identified small RNAs by sequencing in Prunus mume [1]. The reads were mapped to the Prunus persica genome. This entry represents the Prunus persica sequence, but the evidence for mature RNA expression is from Prunus mume.

Genome context
chrG5: 3421262-3421384 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from ppe-MIR6273
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ppe-miR6273

Accession MIMAT0027299
Description Prunus persica ppe-miR6273 mature miRNA
Sequence 83 - AAUGCAGCAUGAUUUUUUUUU - 103
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22863067
    High-throughput sequencing of small RNAs and analysis of differentially expressed microRNAs associated with pistil development in Japanese apricot
    Gao Z, Shi T, Luo X, Zhang Z, Zhuang W, Wang L
    BMC Genomics (2012) 13:371