Stem-loop ppe-MIR6272

Accession

MI0021635

Description

Prunus persica ppe-MIR6272 precursor miRNA

Sequence

uacucuaucaUAGCUGUAAAUGAGUGUUUUUuugguugaauagcuguaaacaaauguacgaaaugucaaucaaacaaacccaaauuuuaguauaugaugaaguag
((((.(((((((((((.((((..(.((((.(((((((((.....((((........)))).....))))))))).)))).)..)))))))).))))))).)))).

Structure

-    c       -    U    GA U    U         auagc    aac 
 uacu uaucaUA GCUG AAAU  G GUUU Uuugguuga     ugua   a
 |||| ||||||| |||| ||||  | |||| |||||||||     ||||    
 auga guaguau ugau uuua  c caaa aaacuaacu     gcau   a
g    a       a    -    aa c    c         guaaa    gua 

Annotation confidence Not enough data

Comments

Gao et al. identified small RNAs by sequencing in Prunus mume [1]. The reads were mapped to the Prunus persica genome. This entry represents the Prunus persica sequence, but the evidence for mature RNA expression is from Prunus mume.

Genome context

chrG4: 17378189-17378293 [-]

Mature ppe-miR6272

• Accession: MIMAT0027298
• Description: Prunus persica ppe-miR6272 mature miRNA
• Sequence: 11 - UAGCUGUAAAUGAGUGUUUUU - 31
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22863067
   High-throughput sequencing of small RNAs and analysis of differentially expressed microRNAs associated with pistil development in Japanese apricot
   Gao Z, Shi T, Luo X, Zhang Z, Zhuang W, Wang L
   BMC Genomics (2012) 13:371