miRBase entry: ppe-MIR6263

Stem-loop ppe-MIR6263


Accession
MI0021617
Description
Prunus persica ppe-MIR6263 precursor miRNA

Literature search
1 open access papers mention ppe-MIR6263
(1 sentences)

Sequence

ugggauugcuuauucuauacuuacacucccuuuuuuguuauaguaaaaaguauuuuuaaaaaauaaaauagagcuuAAGUGGACAAAAGGGGAGUGGagaaaucaac
((((((.....))))))..(((.((((((((((((.(((....(((....((((((........))))))....)))....))))))))))))))))))........

Structure
ugggauugcuuauucuaua   a            u   auag   aaag      uaa 
                   cuu cacucccuuuuu guu    uaa    uauuuu   a
                   ||| |||||||||||| |||    |||    ||||||    
                   gaG GUGAGGGGAAAA CAG    Auu    auaaaa   a
-----------caacuaaa   -            -   GUGA   cgag      uaa 


Annotation confidence Not enough data
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Comments
Gao et al. identified small RNAs by sequencing in Prunus mume [1]. The reads were mapped to the Prunus persica genome. This entry represents the Prunus persica sequence, but the evidence for mature RNA expression is from Prunus mume.

Genome context
chrG2: 20351138-20351244 [+]

Database links

Mature ppe-miR6263

Accession MIMAT0027280
Description Prunus persica ppe-miR6263 mature miRNA
Sequence 77 - AAGUGGACAAAAGGGGAGUGG - 97
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22863067
    High-throughput sequencing of small RNAs and analysis of differentially expressed microRNAs associated with pistil development in Japanese apricot
    Gao Z, Shi T, Luo X, Zhang Z, Zhuang W, Wang L
    BMC Genomics (2012) 13:371