Stem-loop ppe-MIR6262

Accession

MI0021615

Description

Prunus persica ppe-MIR6262 precursor miRNA

Sequence

cacaauaaugUCUUUAGAAAGUUAGAAUUGUgauaauuuuguugagcauacauaaccugccguuauuuuacuuuauuuccuaaacauuucggaccaagguacaaguauucaucaugcaaacaaaacagaauugcagcucaacaaaauaaucacaauucuaacuuucuaaagacauucucguuugaa
......((((((((((((((((((((((((((((.((((((((((((....(((((.....)))))..((((((...(((..........)))..)))))).............(((((...........))))))))))))))))).))))))))))))))))))))))))))))..........

Structure

----cacaau                            a            -------------auacauaaccugccguuauuu      auu   uaaa 
          aaugUCUUUAGAAAGUUAGAAUUGUgau auuuuguugagc                                  uacuuu   ucc    c
          |||||||||||||||||||||||||||| ||||||||||||                                  ||||||   |||     
          uuacagaaaucuuucaaucuuaacacua uaaaacaacucg                                  auggaa   agg    a
aaguuugcuc                            a            acguuaagacaaaacaaacguacuacuuaugaac      -cc   cuuu 

Annotation confidence Low

Comments

Gao et al. identified small RNAs by sequencing in Prunus mume [1]. The reads were mapped to the Prunus persica genome. This entry represents the Prunus persica sequence, but the evidence for mature RNA expression is from Prunus mume.

Genome context

chrG1: 24878869-24879054 [-]

Mature ppe-miR6262

• Accession: MIMAT0027278
• Description: Prunus persica ppe-miR6262 mature miRNA
• Sequence: 11 - UCUUUAGAAAGUUAGAAUUGU - 31
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22863067
   High-throughput sequencing of small RNAs and analysis of differentially expressed microRNAs associated with pistil development in Japanese apricot
   Gao Z, Shi T, Luo X, Zhang Z, Zhuang W, Wang L
   BMC Genomics (2012) 13:371