miRBase entry: ppe-MIR6261

Stem-loop ppe-MIR6261


Accession
MI0021614
Description
Prunus persica ppe-MIR6261 precursor miRNA


Sequence

acauaagaggugcuucuccccagaaucacuuaaaaucacuaaAAGUGAUUAUAUGGAGAAGCACauggaauaug
.........((((((((((....((((((((...........))))))))....))))))))))..........

Structure
-acauaagag          ccag        aaaa 
          gugcuucucc    aaucacuu    u
          ||||||||||    ||||||||    c
          CACGAAGAGG    UUAGUGAA    a
guauaaggua          UAUA        aauc 


Annotation confidence Not enough data
Do you think this miRNA is real?
Comments
Gao et al. identified small RNAs by sequencing in Prunus mume [1]. The reads were mapped to the Prunus persica genome. This entry represents the Prunus persica sequence, but the evidence for mature RNA expression is from Prunus mume.

Genome context
chrG1: 43423620-43423693 [-]

Database links

Mature ppe-miR6261

Accession MIMAT0027277
Description Prunus persica ppe-miR6261 mature miRNA
Sequence 43 - AAGUGAUUAUAUGGAGAAGCAC - 64
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22863067
    High-throughput sequencing of small RNAs and analysis of differentially expressed microRNAs associated with pistil development in Japanese apricot
    Gao Z, Shi T, Luo X, Zhang Z, Zhuang W, Wang L
    BMC Genomics (2012) 13:371