miRBase entry: ppe-MIR171f

Stem-loop ppe-MIR171f


Accession
MI0021611
Description
Prunus persica ppe-MIR171f precursor miRNA

Literature search
6 open access papers mention ppe-MIR171f
(16 sentences)

Sequence

auaguuacugcgauguuggcccgguucacucagagaagaugaauucccuucugaauuUGAUUGAGCCGUGCCAAUAUCucagugcucu
..(((.((((.(((((((((.(((((((.(((((..(((.(......).)))...))))).))))))).))))))))).)))))))..

Structure
au   u    c         c       c     -ga   u aa 
  agu acug gauguuggc cgguuca ucaga   aga g  u
  ||| |||| ||||||||| ||||||| |||||   ||| |   
  ucg ugac CUAUAACCG GCCGAGU AGUuu   ucu c  u
uc   -    u         U       U     aag   u cc 


Annotation confidence Not enough data
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Comments
Gao et al. identified small RNAs by sequencing in Prunus mume [1]. The reads were mapped to the Prunus persica genome. This entry represents the Prunus persica sequence, but the evidence for mature RNA expression is from Prunus mume.

Genome context
chrG1: 33174516-33174603 [+]

Database links

Mature ppe-miR171f

Accession MIMAT0027274
Description Prunus persica ppe-miR171f mature miRNA
Sequence 58 - UGAUUGAGCCGUGCCAAUAUC - 78
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22863067
    High-throughput sequencing of small RNAs and analysis of differentially expressed microRNAs associated with pistil development in Japanese apricot
    Gao Z, Shi T, Luo X, Zhang Z, Zhuang W, Wang L
    BMC Genomics (2012) 13:371