Stem-loop ppe-MIR482a

Accession

MI0021609

Description

Prunus persica ppe-MIR482a precursor miRNA

Literature search

2 open access papers mention ppe-MIR482a
(6 sentences)

Sequence

aagaggaaauggaaauuuuuGGGUGAGAGGUUGCCGGAAAGAauacauaauauucauccaaguuuugauauuaaauucUUUCCGAAACCUCCCAUUCCAAugauuuccagcuauuccuuu
.(((((((.((((((((.(((((((.((((((..((((((((((...((((((.((.........)))))))).)))))))))).)))))).)).))))).))))))))....)))))))

Structure

a       ---a        u     -  A      GC          aca      u  ucc 
 agaggaa    uggaaauu uuGGG UG GAGGUU  CGGAAAGAau   uaauau ca   a
 |||||||    |||||||| ||||| || ||||||  ||||||||||   |||||| ||   a
 uuuccuu    accuuuag AACCU AC CUCCAA  GCCUUUcuua   auuaua gu   g
-       aucg        u     U  C      -A          --a      -  uuu 

Annotation confidence Low

Comments

Gao et al. identified small RNAs by sequencing in Prunus mume [1]. The reads were mapped to the Prunus persica genome. This entry represents the Prunus persica sequence, but the evidence for mature RNA expression is from Prunus mume.

Genome context

chrG1: 30620009-30620128 [+]

Clustered miRNAs

3 other miRNAs are < 10 kb from ppe-MIR482a

Mature ppe-miR482a-5p

• Accession: MIMAT0031165
• Description: Prunus persica ppe-miR482a-5p mature miRNA
• Sequence: 21 - GGGUGAGAGGUUGCCGGAAAGA - 42
• Evidence: experimental ; Illumina [2]

Mature ppe-miR482a-3p

• Accession: MIMAT0027272
• Description: Prunus persica ppe-miR482a-3p mature miRNA
• Sequence: 79 - UUUCCGAAACCUCCCAUUCCAA - 100
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 22863067
   High-throughput sequencing of small RNAs and analysis of differentially expressed microRNAs associated with pistil development in Japanese apricot
   Gao Z, Shi T, Luo X, Zhang Z, Zhuang W, Wang L
   BMC Genomics (2012) 13:371


2. PubMed ID: 22909020
   Unique expression, processing regulation, and regulatory network of peach (Prunus persica) miRNAs
   Zhu H, Xia R, Zhao B, An YQ, Dardick CD, Callahan AM, Liu Z
   BMC Plant Biol (2012) 12:149