Stem-loop nta-MIR162b

Accession

MI0021335

Description

Nicotiana tabacum nta-MIR162b precursor miRNA

Literature search

1 open access papers mention nta-MIR162b
(8 sentences)

Sequence

119650 reads, 7638.0 reads per million, 43 experiments

uugaggacacuGGAGGCAGCGGUUCAUCGAUCUGuucccugaacgcaacagcgcugggaaucggUCGAUAAACCUCUGCAUCCAGcgcuuaaacc
(((((....(((((.((((.((((.(((((((.((((((....(((....)))..)))))).))))))).)))).)))).)))))..)))))...

Structure

---     gaca     G    C    C       U      ugaa   a 
   uugag    cuGGA GCAG GGUU AUCGAUC Guuccc    cgc a
   |||||    ||||| |||| |||| ||||||| ||||||    |||  
   aauuc    GACCU CGUC CCAA UAGCUgg uaaggg    gcg c
cca     --gc     A    U    A       c      --uc   a 

Annotation confidence High

Genome context

Unknown

Mature nta-miR162b-5p

• Accession: MIMAT0058042
• Description: Nicotiana tabacum nta-miR162b-5p mature miRNA
• Sequence: 12 - GGAGGCAGCGGUUCAUCGAUCUG - 34
• Evidence: experimental ; unknown

Mature nta-miR162b-3p

• Accession: MIMAT0024645
• Description: Nicotiana tabacum nta-miR162b-3p mature miRNA
• Sequence: 65 - UCGAUAAACCUCUGCAUCCAG - 85
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22353177
   Identification of wounding and topping responsive small RNAs in tobacco (Nicotiana tabacum)
   Tang S, Wang Y, Li Z, Gui Y, Xiao B, Xie J, Zhu QH, Fan L
   BMC Plant Biol (2012) 12:28