Stem-loop lus-MIR396d

Accession

MI0021257

Description

Linum usitatissimum lus-MIR396d precursor miRNA

Literature search

3 open access papers mention lus-MIR396d
(4 sentences)

Sequence

48275 reads, 6163.0 reads per million, 22 experiments

uggcuuucugaggguauCUUCCCACAGCUUUAUUGAACugcugcuucuacugcaucagagaucucugguuuagccaugCAGUUCAAGAAAGCUGUGGAAgaauacaagcagagcca
((((..((((...(((((((((.((((((((.(((((((((.(((........((((((....))))))..)))...))))))))).))))))))))))).))))...))))))))

Structure

    uu    agg    -     C        A         --u   ucuacugc      g 
uggc  ucug   guau CUUCC ACAGCUUU UUGAACugc   gcu        aucaga a
||||  ||||   |||| ||||| |||||||| |||||||||   |||        ||||||  
accg  agac   caua gAAGG UGUCGAAA AACUUGACg   cga        uggucu u
    --    gaa    a     -        G         uac   ------uu      c 

Annotation confidence Medium

Genome context

Unknown

Mature lus-miR396d-5p

• Accession: MIMAT0027237
• Description: Linum usitatissimum lus-miR396d-5p mature miRNA
• Sequence: 18 - CUUCCCACAGCUUUAUUGAAC - 38
• Evidence: not_experimental

Mature lus-miR396d-3p

• Accession: MIMAT0058452
• Description: Linum usitatissimum lus-miR396d-3p mature miRNA
• Sequence: 79 - CAGUUCAAGAAAGCUGUGGAA - 99
• Evidence: experimental ; unknown

References

1. PubMed ID: 23291876
   Genome-wide identification and characterization of microRNA genes and their targets in flax (Linum usitatissimum): Characterization of flax miRNA genes
   "Barvkar VT, Pardeshi VC, Kale SM, Qiu S, Rollins M, Datla R, Gupta VS, Kadoo NY"
   "Planta (2013) 237:1149-1161