Stem-loop lus-MIR166i

Accession

MI0021256

Description

Linum usitatissimum lus-MIR166i precursor miRNA

Literature search

2 open access papers mention lus-MIR166i
(5 sentences)

Sequence

1364836 reads, 243778.0 reads per million, 24 experiments

uugaggGGAAUGUUGUCUGGCUCGAGGccacuauaguauucagaucucuucucuucuucuuggccggguucuuuuauccgauuagugacgUCGGACCAGGCUUCAUUCCCCCcaa
.((.((((((((..((((((.((((.(.(((((........(((.....)))............(((((......)))))..))))).).)))).))))))..)))))))).)).

Structure

u  a        UU      C    G c     uaguauucagaucucuucucuucuucuuggc     uc 
 ug ggGGAAUG  GUCUGG UCGA G cacua                               cgggu  u
 || ||||||||  |||||| |||| | |||||                               |||||   
 ac CCCCUUAC  CGGACC GGCU c gugau                               gccua  u
a  C        UU      A    g a     -----------------------------ua     uu 

Annotation confidence High

Genome context

Unknown

Mature lus-miR166i-5p

• Accession: MIMAT0058451
• Description: Linum usitatissimum lus-miR166i-5p mature miRNA
• Sequence: 7 - GGAAUGUUGUCUGGCUCGAGG - 27
• Evidence: experimental ; unknown

Mature lus-miR166i-3p

• Accession: MIMAT0027236
• Description: Linum usitatissimum lus-miR166i-3p mature miRNA
• Sequence: 91 - UCGGACCAGGCUUCAUUCCCCC - 112
• Evidence: not_experimental

References

1. PubMed ID: 23291876
   Genome-wide identification and characterization of microRNA genes and their targets in flax (Linum usitatissimum): Characterization of flax miRNA genes
   "Barvkar VT, Pardeshi VC, Kale SM, Qiu S, Rollins M, Datla R, Gupta VS, Kadoo NY"
   "Planta (2013) 237:1149-1161