Stem-loop lus-MIR159c

Accession

MI0021255

Description

Linum usitatissimum lus-MIR159c precursor miRNA

Literature search

2 open access papers mention lus-MIR159c
(9 sentences)

Sequence

2366406 reads, 473937.0 reads per million, 24 experiments

gagagauaaaaagagggagAGCUCCUUUGGGUCCAAACAGaggguguggauagggugaaacggaagcugcugagcuauggauuccacagccacccccguaucuuaaauaauuggggugguuguggcucguuuugcauaucucaggagccuccguucccuguuuucuuuucuucccuccUUUGGAUUGAAGGGAGCUCUUcauuucuu
(((((((........(((((((((((((.((((((((..(((((...((((((((...((((((.(((.(((((.(((((((.(((((((((((((.((..........)).)))))))))))))...)))...)))).))))).))).)))))))))))))).........))))).)))))))).))))))))))))))))))))

Structure

       aaaaagag             G        CA     ------ugu        uga      a   g     c    ---   --u             c  aucu 
gagagau        ggagAGCUCCUUU GGUCCAAA  Gaggg         ggauaggg   aacgga gcu cugag uaug   gau   ccacagccacccc gu    u
|||||||        ||||||||||||| ||||||||  |||||         ||||||||   |||||| ||| ||||| ||||   |||   ||||||||||||| ||     
uucuuua        cUUCUCGAGGGAA UUAGGUUU  cuccc         uuuguccc   uugccu cga gacuc auac   uug   gguguuggugggg ua    a
       --------             G        -c     uucuuuucu        ---      c   g     u    guu   cuc             u  auaa 

Annotation confidence High

Genome context

Unknown

Mature lus-miR159c-5p

• Accession: MIMAT0058450
• Description: Linum usitatissimum lus-miR159c-5p mature miRNA
• Sequence: 20 - AGCUCCUUUGGGUCCAAACAG - 40
• Evidence: experimental ; unknown

Mature lus-miR159c-3p

• Accession: MIMAT0027235
• Description: Linum usitatissimum lus-miR159c-3p mature miRNA
• Sequence: 179 - UUUGGAUUGAAGGGAGCUCUU - 199
• Evidence: experimental ; qRT-PCR [1]

References

1. PubMed ID: 23291876
   Genome-wide identification and characterization of microRNA genes and their targets in flax (Linum usitatissimum): Characterization of flax miRNA genes
   "Barvkar VT, Pardeshi VC, Kale SM, Qiu S, Rollins M, Datla R, Gupta VS, Kadoo NY"
   "Planta (2013) 237:1149-1161