Stem-loop lus-MIR172j

Accession

MI0021254

Description

Linum usitatissimum lus-MIR172j precursor miRNA

Literature search

1 open access papers mention lus-MIR172j
(1 sentences)

Sequence

5508 reads, 961.0 reads per million, 23 experiments

ugauugccgcuGCAGCAUCAUCAAGAUUCCCAauacccccgcccaugaaugauuugggcaaaagugaaaaaaaaaaagcuuauaaagauaagcucuuuuauuuuaacuuugccuuuguggguuUGUGAAUCUUGAUGAUGCUCCaauagcaagcaguggcuguua
((((.((((((((((((((((((((((((.(((.......((((((((.......(((((((.((.((((.((((.(((((((....))))))).)))).)))).)))))))))))))))))))).))))))))))))))))..........)))))))).))))

Structure

    u        ----------                C   uaccccc        augauuu       a  g    a    a       a 
ugau gccgcuGC          AGCAUCAUCAAGAUUC CAa       gcccauga       gggcaaa gu aaaa aaaa agcuuau a
|||| ||||||||          |||||||||||||||| |||       ||||||||       ||||||| || |||| |||| |||||||  
auug cggugacg          UCGUAGUAGUUCUAAG GUu       uggguguu       uccguuu ca uuuu uuuu ucgaaua a
    u        aacgauaaCC                U   -------        -------       -  a    a    c       g 

Annotation confidence Medium

Genome context

Unknown

Mature lus-miR172j-5p

• Accession: MIMAT0027234
• Description: Linum usitatissimum lus-miR172j-5p mature miRNA
• Sequence: 12 - GCAGCAUCAUCAAGAUUCCCA - 32
• Evidence: not_experimental

Mature lus-miR172j-3p

• Accession: MIMAT0058449
• Description: Linum usitatissimum lus-miR172j-3p mature miRNA
• Sequence: 124 - UGUGAAUCUUGAUGAUGCUCC - 144
• Evidence: experimental ; unknown

References

1. PubMed ID: 23291876
   Genome-wide identification and characterization of microRNA genes and their targets in flax (Linum usitatissimum): Characterization of flax miRNA genes
   "Barvkar VT, Pardeshi VC, Kale SM, Qiu S, Rollins M, Datla R, Gupta VS, Kadoo NY"
   "Planta (2013) 237:1149-1161