Stem-loop lus-MIR159b

Accession

MI0021253

Description

Linum usitatissimum lus-MIR159b precursor miRNA

Literature search

2 open access papers mention lus-MIR159b
(4 sentences)

Sequence

2278921 reads, 455761.0 reads per million, 24 experiments

aagagAGCUCCUUUGGGUCCAAACAGaggguguggauagggugagauggaagcugcugagcuauggauuccacaaccccacccuuuugauuauugauccgguggguuguggcucguuuugcauaucucaggagccuccguucccuguuuucuucucuucccuccUUUGGAUUGAAGGGAGCUCUcuu
((((((((((((((.((((((((..(((((...((((((((...((((((.(((.(((((.(((((((.(((((((((.(((.....((((...)))).))))))))))))...)))...)))).))))).))).)))))))))))))).........))))).)))))))).))))))))))))))

Structure

              G        CA     ------ugu        uga      a   g     c    ---   --u         c   cuuuu    a 
aagagAGCUCCUUU GGUCCAAA  Gaggg         ggauaggg   gaugga gcu cugag uaug   gau   ccacaaccc acc     gauu  
|||||||||||||| ||||||||  |||||         ||||||||   |||||| ||| ||||| ||||   |||   ||||||||| |||     |||| u
uucUCUCGAGGGAA UUAGGUUU  cuccc         uuuguccc   uugccu cga gacuc auac   uug   gguguuggg ugg     cuag  
              G        -c     uucucuucu        ---      c   g     u    guu   cuc         -   ----c    u 

Annotation confidence High

Genome context

Unknown

Mature lus-miR159b-5p

• Accession: MIMAT0058448
• Description: Linum usitatissimum lus-miR159b-5p mature miRNA
• Sequence: 6 - AGCUCCUUUGGGUCCAAACAG - 26
• Evidence: experimental ; unknown

Mature lus-miR159b-3p

• Accession: MIMAT0027233
• Description: Linum usitatissimum lus-miR159b-3p mature miRNA
• Sequence: 165 - UUUGGAUUGAAGGGAGCUCU - 184
• Evidence: not_experimental

References

1. PubMed ID: 23291876
   Genome-wide identification and characterization of microRNA genes and their targets in flax (Linum usitatissimum): Characterization of flax miRNA genes
   "Barvkar VT, Pardeshi VC, Kale SM, Qiu S, Rollins M, Datla R, Gupta VS, Kadoo NY"
   "Planta (2013) 237:1149-1161