Stem-loop lus-MIR166h

Accession

MI0021251

Description

Linum usitatissimum lus-MIR166h precursor miRNA

Literature search

2 open access papers mention lus-MIR166h
(5 sentences)

Sequence

1363790 reads, 242488.0 reads per million, 24 experiments

gaaucguaaagaaggcugggagcuuuuuaauaucuuuugaggGGAAUGUUGUCUGGCUCGAAGccgcuauuaacaauggccgaugagaaauucggcagauagguuuagcgacuUCGGACCAGGCUUCAUUCCCCccaauugcuuugcuccaguucccucuaauuauucccgaucuggacgauuc
(((((((..(((.((..(((((((.........(..(((.((((((((..((((((.((((((.(((((.........(((((........))))).........))))).)))))).))))))..)))))))).)))..).........)))))))...........))..)))..)))))))

Structure

       aa   -a  ---------cu       uuuuaauau uu   a        UU      C      c     uuaacaaug     uga 
gaaucgu  aga  gg           gggagcu         c  uug ggGGAAUG  GUCUGG UCGAAG cgcua         gccga   g
|||||||  |||  ||           |||||||         |  ||| ||||||||  |||||| |||||| |||||         |||||    
cuuagca  ucu  cc           cccuuga         g  aac CCCCUUAC  CGGACC GGCUuc gcgau         cggcu   a
       gg   ag  cuuauuaaucu       ccucguuuc uu   c        UU      A      a     uuggauaga     uaa 

Annotation confidence High

Genome context

Unknown

Mature lus-miR166h-5p

• Accession: MIMAT0058446
• Description: Linum usitatissimum lus-miR166h-5p mature miRNA
• Sequence: 43 - GGAAUGUUGUCUGGCUCGAAG - 63
• Evidence: experimental ; unknown

Mature lus-miR166h-3p

• Accession: MIMAT0027231
• Description: Linum usitatissimum lus-miR166h-3p mature miRNA
• Sequence: 114 - UCGGACCAGGCUUCAUUCCCC - 134
• Evidence: not_experimental

References

1. PubMed ID: 23291876
   Genome-wide identification and characterization of microRNA genes and their targets in flax (Linum usitatissimum): Characterization of flax miRNA genes
   "Barvkar VT, Pardeshi VC, Kale SM, Qiu S, Rollins M, Datla R, Gupta VS, Kadoo NY"
   "Planta (2013) 237:1149-1161