Stem-loop lus-MIR172i

Accession

MI0021250

Description

Linum usitatissimum lus-MIR172i precursor miRNA

Literature search

2 open access papers mention lus-MIR172i
(2 sentences)

Sequence

10531 reads, 1890.0 reads per million, 24 experiments

agccacugcuugcuacuGGAGCAUCAUCAAGAUUCACAaccccacccacggacuaccaaaaagcuuucaucuuuucaucaugacguuguggguauugGGAAUCUUGAUGAUGCUGCAGcggcaaucacugccu
((.((.((.(((((.(((.((((((((((((((((.(((.(((((..(((........(((((.......)))))........))).)))))..))).)))))))))))))))).))).))))).)).)).))

Structure

  c  c  c     a   G                A   -c     cc   gacuacca     cu 
ag ca ug uugcu cuG AGCAUCAUCAAGAUUC CAa  cccac  acg        aaaag  u
|| || || ||||| ||| |||||||||||||||| |||  |||||  |||        |||||  u
uc gu ac aacgg GAC UCGUAGUAGUUCUAAG guu  gggug  ugc        uuuuc  c
  c  c  u     c   G                G   au     -u   aguacuac     ua 

Annotation confidence High

Genome context

Unknown

Mature lus-miR172i-5p

• Accession: MIMAT0058445
• Description: Linum usitatissimum lus-miR172i-5p mature miRNA
• Sequence: 18 - GGAGCAUCAUCAAGAUUCACA - 38
• Evidence: experimental ; unknown

Mature lus-miR172i-3p

• Accession: MIMAT0027230
• Description: Linum usitatissimum lus-miR172i-3p mature miRNA
• Sequence: 98 - GGAAUCUUGAUGAUGCUGCAG - 118
• Evidence: experimental ; qRT-PCR [1]

References

1. PubMed ID: 23291876
   Genome-wide identification and characterization of microRNA genes and their targets in flax (Linum usitatissimum): Characterization of flax miRNA genes
   "Barvkar VT, Pardeshi VC, Kale SM, Qiu S, Rollins M, Datla R, Gupta VS, Kadoo NY"
   "Planta (2013) 237:1149-1161