Stem-loop lus-MIR172h

Accession

MI0021248

Description

Linum usitatissimum lus-MIR172h precursor miRNA

Literature search

1 open access papers mention lus-MIR172h
(1 sentences)

Sequence

auggaaaccaacagucauuggucgcaggugcagcaucaucaagauucacaugcauuauauacagagaguuaaaucgaauuuaaaccuacugacuaccacaaaagcaaggcauaguuacauaacaucuggaaaagaggcugugucuuguguuuugucuuugaguagguuugaaucgugauucuauuacgguggcuagugAGAAUCUUGAUGAUGCUGCAUcagcgguauaugacuuaauuagcuucau
(((((.......((((((...((((.(((((((((((((((((((((.(((...((((......(((((((...(((.((((((((((((.(.....(((((((((((((((((((........(((.....)))))))))))))))).))))))...).))))))))))))))))))))))......))))...))).))))))))))))))))))))).))))...))))))........)))))

Structure

     -aaccaac      ugg    a                     a   gca    auacag       aau   a            g cuacc      -             acauaaca   g 
augga        agucau   ucgc ggugcagcaucaucaagauuc cau   uuau      agaguua   cga uuuaaaccuacu a     acaaaa gcaaggcauaguu        ucu g
|||||        ||||||   |||| ||||||||||||||||||||| |||   ||||      |||||||   ||| |||||||||||| |     |||||| |||||||||||||        ||| a
uacuu        ucagua   ggcg cUACGUCGUAGUAGUUCUAAG gug   ggug      ucuuagu   gcu aaguuuggauga u     uguuuu uguucugugucgg        aga a
     cgauuaau      uau    a                     A   auc    gcauua       ---   -            g --uuc      g             --------   a 

Annotation confidence Not enough data

Genome context

Unknown

Mature lus-miR172h

• Accession: MIMAT0027228
• Description: Linum usitatissimum lus-miR172h mature miRNA
• Sequence: 199 - AGAAUCUUGAUGAUGCUGCAU - 219
• Evidence: not_experimental

References

1. PubMed ID: 23291876
   Genome-wide identification and characterization of microRNA genes and their targets in flax (Linum usitatissimum): Characterization of flax miRNA genes
   "Barvkar VT, Pardeshi VC, Kale SM, Qiu S, Rollins M, Datla R, Gupta VS, Kadoo NY"
   "Planta (2013) 237:1149-1161