Stem-loop lus-MIR164e

Accession

MI0021247

Description

Linum usitatissimum lus-MIR164e precursor miRNA

Literature search

2 open access papers mention lus-MIR164e
(3 sentences)

Sequence

61205 reads, 10469.0 reads per million, 24 experiments

gggagagaagcuccuugcUGGAGAAGCAGGGCACGUGCAaaagaucaauacuuuggccguggcugaucauugguugCACGUGCUCCCCUUCUCCAACAuggguuucucauccc
(((((((((((.((.((.((((((((..((((((((((((..(((((.(((.......)))..))))).....))))))))))))..)))))))).)).))))))))).))))

Structure

    -       u  u  c        CA            ---aa     -a   uu 
ggga gagaagc cc ug UGGAGAAG  GGGCACGUGCAa     gauca  uac  u
|||| ||||||| || || ||||||||  ||||||||||||     |||||  |||  g
cccu cucuuug gg AC ACCUCUUC  CUCGUGCACguu     cuagu  gug  g
    a       -  u  A        CC            gguua     cg   cc 

Annotation confidence High

Genome context

Unknown

Mature lus-miR164e-5p

• Accession: MIMAT0027227
• Description: Linum usitatissimum lus-miR164e-5p mature miRNA
• Sequence: 19 - UGGAGAAGCAGGGCACGUGCA - 39
• Evidence: not_experimental

Mature lus-miR164e-3p

• Accession: MIMAT0058442
• Description: Linum usitatissimum lus-miR164e-3p mature miRNA
• Sequence: 77 - CACGUGCUCCCCUUCUCCAACA - 98
• Evidence: experimental ; unknown

References

1. PubMed ID: 23291876
   Genome-wide identification and characterization of microRNA genes and their targets in flax (Linum usitatissimum): Characterization of flax miRNA genes
   "Barvkar VT, Pardeshi VC, Kale SM, Qiu S, Rollins M, Datla R, Gupta VS, Kadoo NY"
   "Planta (2013) 237:1149-1161