Stem-loop lus-MIR172g

Accession

MI0021246

Description

Linum usitatissimum lus-MIR172g precursor miRNA

Literature search

1 open access papers mention lus-MIR172g
(1 sentences)

Sequence

5615 reads, 983.0 reads per million, 24 experiments

auuaacagccauaguuugcugauGGAGCAUCAUCAAGAUUCACAgaucuagcugugguacuauuauaguuggcuaguagagaaaacuugGGAAUCUUGAUGAUGCUGCAUcggcaaucaauggcuuagu
......((((((.(.(((((((((.((((((((((((((((.(((..(((((((((((...)))))))))))..............))).)))))))))))))))).))))))))).).))))))....

Structure

auuaac      a u         G                A   ------------au           a 
      agccau g uugcugauG AGCAUCAUCAAGAUUC CAg              cuagcuguggu  
      |||||| | ||||||||| |||||||||||||||| |||              ||||||||||| c
      ucggua c aacggcUAC UCGUAGUAGUUCUAAG guu              gguugauauua  
--ugau      a u         G                G   caaaagagaugauc           u 

Annotation confidence High

Genome context

Unknown

Mature lus-miR172g-5p

• Accession: MIMAT0058441
• Description: Linum usitatissimum lus-miR172g-5p mature miRNA
• Sequence: 24 - GGAGCAUCAUCAAGAUUCACA - 44
• Evidence: experimental ; unknown

Mature lus-miR172g-3p

• Accession: MIMAT0027226
• Description: Linum usitatissimum lus-miR172g-3p mature miRNA
• Sequence: 90 - GGAAUCUUGAUGAUGCUGCAU - 110
• Evidence: not_experimental

References

1. PubMed ID: 23291876
   Genome-wide identification and characterization of microRNA genes and their targets in flax (Linum usitatissimum): Characterization of flax miRNA genes
   "Barvkar VT, Pardeshi VC, Kale SM, Qiu S, Rollins M, Datla R, Gupta VS, Kadoo NY"
   "Planta (2013) 237:1149-1161