Stem-loop lus-MIR171i

Accession

MI0021244

Description

Linum usitatissimum lus-MIR171i precursor miRNA

Literature search

3 open access papers mention lus-MIR171i
(7 sentences)

Sequence

6053 reads, 1189.0 reads per million, 21 experiments

gaggggagucgaaauuaacgAGAUAUUGGUCCGGUUCAAUAugaaaacaauguucagaaucuggaguugagcacuguuuuuucaUUGAGCCGUGCCAAUAUCACGugucguuccuuccuccuccuc
((((((((..(((....(((.(((((((((.(((((((((..(((((((.(((((((.........))))))).)))))))..))))))))).))))))))).)))....)))....)))).))))

Structure

    -    --uc   auua   A         C         Au       a       aau 
gagg ggag    gaa    acg GAUAUUGGU CGGUUCAAU  gaaaaca uguucag   c
|||| ||||    |||    ||| ||||||||| |||||||||  ||||||| |||||||   u
cucc ccuc    cuu    uGC CUAUAACCG GCCGAGUUa  uuuuugu acgaguu   g
    u    cuuc   gcug   A         U         cu       c       gag 

Annotation confidence Medium

Genome context

Unknown

Mature lus-miR171i-5p

• Accession: MIMAT0058440
• Description: Linum usitatissimum lus-miR171i-5p mature miRNA
• Sequence: 21 - AGAUAUUGGUCCGGUUCAAUA - 41
• Evidence: experimental ; unknown

Mature lus-miR171i-3p

• Accession: MIMAT0027224
• Description: Linum usitatissimum lus-miR171i-3p mature miRNA
• Sequence: 85 - UUGAGCCGUGCCAAUAUCACG - 105
• Evidence: not_experimental

References

1. PubMed ID: 23291876
   Genome-wide identification and characterization of microRNA genes and their targets in flax (Linum usitatissimum): Characterization of flax miRNA genes
   "Barvkar VT, Pardeshi VC, Kale SM, Qiu S, Rollins M, Datla R, Gupta VS, Kadoo NY"
   "Planta (2013) 237:1149-1161