Stem-loop lus-MIR160i

Accession

MI0021242

Description

Linum usitatissimum lus-MIR160i precursor miRNA

Literature search

2 open access papers mention lus-MIR160i
(6 sentences)

Sequence

13538 reads, 2599.0 reads per million, 24 experiments

uaaaugugacggguuaUGCCUGGCUCCCUGUAUGCCAccgacaacccuuccagucuuuuuguuugAUUGAUAGUUGUCGUUGGCGUacacggaaucaagcauaccuauuucuuuua
((((.(.((.((((.((((.(((.(((.(((((((((.(((((((.....(((((.........)))))...))))))).))))))))).))).))).)))))))).)).).))))

Structure

    u u  c    u    C   C   C         c       ccuuc     uuu 
uaaa g ga gggu aUGC UGG UCC UGUAUGCCA cgacaac     caguc   u
|||| | || |||| |||| ||| ||| ||||||||| |||||||     |||||   u
auuu c uu ucca uacg acu agg acaUGCGGU GCUGUUG     GUUAg   g
    u u  a    -    a   a   c         U       --AUA     uuu 

Annotation confidence Not enough data

Genome context

Unknown

Mature lus-miR160i-5p

• Accession: MIMAT0027222
• Description: Linum usitatissimum lus-miR160i-5p mature miRNA
• Sequence: 17 - UGCCUGGCUCCCUGUAUGCCA - 37
• Evidence: not_experimental

Mature lus-miR160i-3p

• Accession: MIMAT0058438
• Description: Linum usitatissimum lus-miR160i-3p mature miRNA
• Sequence: 66 - AUUGAUAGUUGUCGUUGGCGU - 86
• Evidence: experimental ; unknown

References

1. PubMed ID: 23291876
   Genome-wide identification and characterization of microRNA genes and their targets in flax (Linum usitatissimum): Characterization of flax miRNA genes
   "Barvkar VT, Pardeshi VC, Kale SM, Qiu S, Rollins M, Datla R, Gupta VS, Kadoo NY"
   "Planta (2013) 237:1149-1161