Stem-loop lus-MIR166f

Accession

MI0021241

Description

Linum usitatissimum lus-MIR166f precursor miRNA

Literature search

2 open access papers mention lus-MIR166f
(5 sentences)

Sequence

431950 reads, 78181.0 reads per million, 24 experiments

guacuaggcaccgguacguuucaguauuaagaaagcaguguauggAAUGAAGUUUGAUCCAAGAUCaggaggacuaugcucggucucccaaaucUCGGACCAGGCUUCAUUCCUUacagucuuucuuuuccauccguaauuuguagcauuguac
((((...((((...((((..........(((((((.(.((((.(((((((((((((.(((.((((..((.(((((......))))).))..)))).))).))))))))))))).)))).)))))))).......))))....)).))...))))

Structure

    uag  -  -cgg    uuucaguauu       c g    u             A   A    Ca  a     au 
guac   gc ac    uacg          aagaaag a ugua ggAAUGAAGUUUG UCC AGAU  gg ggacu  g
||||   || ||    ||||          ||||||| | |||| ||||||||||||| ||| ||||  || |||||   
caug   cg ug    augc          uucuuuc u acaU CCUUACUUCGGAC AGG Ucua  cc ucugg  c
    uua  a  uuua    ---cuaccuu       - g    U             C   C    aa  c     cu 

Annotation confidence High

Genome context

Unknown

Mature lus-miR166f-5p

• Accession: MIMAT0058437
• Description: Linum usitatissimum lus-miR166f-5p mature miRNA
• Sequence: 46 - AAUGAAGUUUGAUCCAAGAUC - 66
• Evidence: experimental ; unknown

Mature lus-miR166f-3p

• Accession: MIMAT0027221
• Description: Linum usitatissimum lus-miR166f-3p mature miRNA
• Sequence: 95 - UCGGACCAGGCUUCAUUCCUU - 115
• Evidence: not_experimental

References

1. PubMed ID: 23291876
   Genome-wide identification and characterization of microRNA genes and their targets in flax (Linum usitatissimum): Characterization of flax miRNA genes
   "Barvkar VT, Pardeshi VC, Kale SM, Qiu S, Rollins M, Datla R, Gupta VS, Kadoo NY"
   "Planta (2013) 237:1149-1161