Stem-loop lus-MIR393b

Accession

MI0021238

Description

Linum usitatissimum lus-MIR393b precursor miRNA

Literature search

2 open access papers mention lus-MIR393b
(23 sentences)

Sequence

632 reads, 126.0 reads per million, 22 experiments

ugaugaacuaacuuagugcagauugagaguUCCAAAGGGAUCGCAUUGAUCuaaucaugaugauauagagagcaucuuccaccagcuaauuaguuagAUCAUGCGAUCCCUUUCGAAUucuccaucucugcuucuaaacuccacauca
(((((.......((((.(((((..((((((((.(((((((((((((.((((((((...((((..........))))................))))))))))))))))))))).))))))))....)))))..))))......)))))

Structure

     aacuaac    -u     --uu        C             U        -------------cau    auau 
ugaug       uuag  gcaga    gagaguUC AAAGGGAUCGCAU GAUCuaau                gaug    a
|||||       ||||  |||||    |||||||| ||||||||||||| ||||||||                ||||     
acuac       aauc  cgucu    cucuUAAG UUUCCCUAGCGUA CUAgauug                cuac    g
     -accuca    uu     cuac        C             -        auuaaucgaccaccuu    gaga 

Annotation confidence High

Genome context

Unknown

Mature lus-miR393b-5p

• Accession: MIMAT0027218
• Description: Linum usitatissimum lus-miR393b-5p mature miRNA
• Sequence: 31 - UCCAAAGGGAUCGCAUUGAUC - 51
• Evidence: not_experimental

Mature lus-miR393b-3p

• Accession: MIMAT0058436
• Description: Linum usitatissimum lus-miR393b-3p mature miRNA
• Sequence: 98 - AUCAUGCGAUCCCUUUCGAAU - 118
• Evidence: experimental ; unknown

References

1. PubMed ID: 23291876
   Genome-wide identification and characterization of microRNA genes and their targets in flax (Linum usitatissimum): Characterization of flax miRNA genes
   "Barvkar VT, Pardeshi VC, Kale SM, Qiu S, Rollins M, Datla R, Gupta VS, Kadoo NY"
   "Planta (2013) 237:1149-1161