Stem-loop lus-MIR166e

Accession

MI0021237

Description

Linum usitatissimum lus-MIR166e precursor miRNA

Literature search

2 open access papers mention lus-MIR166e
(5 sentences)

Sequence

431813 reads, 78174.0 reads per million, 24 experiments

gcaccaguacuuacguuucgguauuaagaaagcaguguauggAAUGAAGUUUGAUCCAAGAUCaggaggacggacuccgucucccaaaucUCGGACCAGGCUUCAUUCCUCacacccuuucuuuuccauccguaguucguaguauuauugu
(((..((((((.(((...(((....(((((((..((((..(((((((((((((.(((.((((..((.((((((...)))))).))..)))).))).)))))))))))))..)))).)))))))......))).....)))))))))..)))

Structure

   cc      u   --uuu   --uauu       ca    au             A   A    Ca  a      a 
gca  aguacu acg     cgg      aagaaag  gugu  ggAAUGAAGUUUG UCC AGAU  gg ggacgg  
|||  |||||| |||     |||      |||||||  ||||  ||||||||||||| ||| ||||  || |||||| c
ugu  uuauga ugc     gcc      uucuuuc  caca  CCUUACUUCGGAC AGG Ucua  cc ucugcc  
   ua      -   uugau   uaccuu       -c    CU             C   C    aa  c      u 

Annotation confidence High

Genome context

Unknown

Mature lus-miR166e-5p

• Accession: MIMAT0058435
• Description: Linum usitatissimum lus-miR166e-5p mature miRNA
• Sequence: 43 - AAUGAAGUUUGAUCCAAGAUC - 63
• Evidence: experimental ; unknown

Mature lus-miR166e-3p

• Accession: MIMAT0027217
• Description: Linum usitatissimum lus-miR166e-3p mature miRNA
• Sequence: 91 - UCGGACCAGGCUUCAUUCCUC - 111
• Evidence: not_experimental

References

1. PubMed ID: 23291876
   Genome-wide identification and characterization of microRNA genes and their targets in flax (Linum usitatissimum): Characterization of flax miRNA genes
   "Barvkar VT, Pardeshi VC, Kale SM, Qiu S, Rollins M, Datla R, Gupta VS, Kadoo NY"
   "Planta (2013) 237:1149-1161