Stem-loop lus-MIR156a

Accession

MI0021236

Description

Linum usitatissimum lus-MIR156a precursor miRNA

Literature search

3 open access papers mention lus-MIR156a
(6 sentences)

Sequence

16221 reads, 3045.0 reads per million, 24 experiments

agagagagauaaugggaggaggaggaggugaggagggugauagaCUGACAGAAGAGAGUGAGCACAcaaacaggcaauuguauggauggaguaccuuugcggggugcguGCUCACUUCUCUUCUGUCAUCUcaaauugaucuuaucuccuccuccuccuccuuugaucuuaucuccucucu
((((((((((((.((((((((((((((((((((..(((...(((.((((((((((((((((((((.((..(..((((..((((.......))))..)))).)..)).)))))))).)))))))))))))))...)))..)))))))))))))))))))).........)))))).))))))

Structure

      -      --------u                    ag   gau   C            -        A  aa ag    uu    gg 
agagag agauaa         gggaggaggaggaggugagg  ggu   aga UGACAGAAGAGA GUGAGCAC ca  c  gcaa  guau  a
|||||| ||||||         ||||||||||||||||||||  |||   ||| |||||||||||| |||||||| ||  |  ||||  ||||  u
ucucuc ucuauu         uccuccuccuccucuauucu  uua   UCU ACUGUCUUCUCU CACUCGug gu  g  cguu  caug  g
      c      cuaguuucc                    ag   aac   -            U        c  gg -g    uc    ag 

Annotation confidence High

Genome context

Unknown

Mature lus-miR156a-5p

• Accession: MIMAT0027216
• Description: Linum usitatissimum lus-miR156a-5p mature miRNA
• Sequence: 45 - CUGACAGAAGAGAGUGAGCACA - 66
• Evidence: experimental ; qRT-PCR [1]

Mature lus-miR156a-3p

• Accession: MIMAT0058434
• Description: Linum usitatissimum lus-miR156a-3p mature miRNA
• Sequence: 110 - GCUCACUUCUCUUCUGUCAUCU - 131
• Evidence: experimental ; unknown

References

1. PubMed ID: 23291876
   Genome-wide identification and characterization of microRNA genes and their targets in flax (Linum usitatissimum): Characterization of flax miRNA genes
   "Barvkar VT, Pardeshi VC, Kale SM, Qiu S, Rollins M, Datla R, Gupta VS, Kadoo NY"
   "Planta (2013) 237:1149-1161