Stem-loop lus-MIR169l

Accession

MI0021235

Description

Linum usitatissimum lus-MIR169l precursor miRNA

Literature search

2 open access papers mention lus-MIR169l
(10 sentences)

Sequence

338 reads, 100.0 reads per million, 24 experiments

guggguaugCAGCCAAGGAUGACUUGCCGAcuacugccucucuuccaugguucuuuuagaucaaaugagcuuugaucaucauugguugauuugauuguguugguggugguugGCAAGUUGUCUGUGGCUAUAuuccugu
..(((.(((.(((((.((((((((((((((((((((((....................((((((((.((((.(((...)))..)))).)))))))).....)))))))))))))))))))))).))))).))).)))..

Structure

gu   u   C     A                      ucucuuccaugguucuuuua        g    -u   u 
  ggg aug AGCCA GGAUGACUUGCCGAcuacugcc                    gaucaaau agcu  uga  
  ||| ||| ||||| ||||||||||||||||||||||                    |||||||| ||||  ||| c
  ucc uAU UCGGU UCUGUUGAACGguugguggugg                    uuaguuua uugg  acu  
ug   u   A     G                      ---------------uugug        g    uu   a 

Annotation confidence High

Genome context

Unknown

Mature lus-miR169l-5p

• Accession: MIMAT0027215
• Description: Linum usitatissimum lus-miR169l-5p mature miRNA
• Sequence: 10 - CAGCCAAGGAUGACUUGCCGA - 30
• Evidence: not_experimental

Mature lus-miR169l-3p

• Accession: MIMAT0058433
• Description: Linum usitatissimum lus-miR169l-3p mature miRNA
• Sequence: 113 - GCAAGUUGUCUGUGGCUAUA - 132
• Evidence: experimental ; unknown

References

1. PubMed ID: 23291876
   Genome-wide identification and characterization of microRNA genes and their targets in flax (Linum usitatissimum): Characterization of flax miRNA genes
   "Barvkar VT, Pardeshi VC, Kale SM, Qiu S, Rollins M, Datla R, Gupta VS, Kadoo NY"
   "Planta (2013) 237:1149-1161