Stem-loop lus-MIR398c

Accession

MI0021234

Description

Linum usitatissimum lus-MIR398c precursor miRNA

Literature search

3 open access papers mention lus-MIR398c
(14 sentences)

Sequence

3972 reads, 746.0 reads per million, 24 experiments

ggcaagaGGGGUGCAACCUGAAAACACAGAcgacggauuuuagucgcuugguucgaguuaacuauacuuaucucgucucUGUGUUCUCAGGUCACCCCUccaggcc
(((..((((((((..((((((.((((((((.(((((((..((((.(((((...)))))..)))).....))).)))))))))))).))))))))))))))...)))

Structure

   -aa        CA      A        c    -   ---uu    -c     g 
ggc   gaGGGGUG  ACCUGA AACACAGA gacg gau     uagu  gcuug  
|||   ||||||||  |||||| |||||||| |||| |||     ||||  ||||| u
ccg   cUCCCCAC  UGGACU UUGUGUcu cugc cua     auca  ugagc  
   gac        --      C        -    u   uucau    au     u 

Annotation confidence High

Genome context

Unknown

Mature lus-miR398c-5p

• Accession: MIMAT0058432
• Description: Linum usitatissimum lus-miR398c-5p mature miRNA
• Sequence: 8 - GGGGUGCAACCUGAAAACACAGA - 30
• Evidence: experimental ; unknown

Mature lus-miR398c-3p

• Accession: MIMAT0027214
• Description: Linum usitatissimum lus-miR398c-3p mature miRNA
• Sequence: 80 - UGUGUUCUCAGGUCACCCCU - 99
• Evidence: not_experimental

References

1. PubMed ID: 23291876
   Genome-wide identification and characterization of microRNA genes and their targets in flax (Linum usitatissimum): Characterization of flax miRNA genes
   "Barvkar VT, Pardeshi VC, Kale SM, Qiu S, Rollins M, Datla R, Gupta VS, Kadoo NY"
   "Planta (2013) 237:1149-1161