Stem-loop lus-MIR396c

Accession

MI0021233

Description

Linum usitatissimum lus-MIR396c precursor miRNA

Literature search

3 open access papers mention lus-MIR396c
(5 sentences)

Sequence

421144 reads, 59372.0 reads per million, 24 experiments

gccucugcuuuuauccUUCCACAGCUUUCUUGAACUGcauauauauauauaugcgaauuaggguuuuuguauuauaauugugugcgGUUCAAUAAAGCUGUGGGAAGauacaaucagggc
(((.(((.((.((((.((((((((((((.((((((((((((((..((((.(((((((........)))))))))))..)))))))))))))).)))))))))))).)))).)).))))))

Structure

   u   c  u    c            C              ua    u       uua 
gcc cug uu uauc UUCCACAGCUUU UUGAACUGcauaua  uaua augcgaa   g
||| ||| || |||| |||||||||||| ||||||||||||||  |||| |||||||    
cgg gac aa auaG AGGGUGUCGAAA AACUUGgcgugugu  auau uauguuu   g
   -   u  c    A            U              ua    -       uug 

Annotation confidence High

Genome context

Unknown

Mature lus-miR396c-5p

• Accession: MIMAT0027213
• Description: Linum usitatissimum lus-miR396c-5p mature miRNA
• Sequence: 17 - UUCCACAGCUUUCUUGAACUG - 37
• Evidence: experimental ; qRT-PCR [1]

Mature lus-miR396c-3p

• Accession: MIMAT0058431
• Description: Linum usitatissimum lus-miR396c-3p mature miRNA
• Sequence: 87 - GUUCAAUAAAGCUGUGGGAAG - 107
• Evidence: experimental ; unknown

References

1. PubMed ID: 23291876
   Genome-wide identification and characterization of microRNA genes and their targets in flax (Linum usitatissimum): Characterization of flax miRNA genes
   "Barvkar VT, Pardeshi VC, Kale SM, Qiu S, Rollins M, Datla R, Gupta VS, Kadoo NY"
   "Planta (2013) 237:1149-1161