Stem-loop lus-MIR396b

Accession

MI0021232

Description

Linum usitatissimum lus-MIR396b precursor miRNA

Literature search

3 open access papers mention lus-MIR396b
(4 sentences)

Sequence

668311 reads, 98542.0 reads per million, 24 experiments

ucagacuaguccuggccaugcuaUUCCACAGCUUUCUUGAACUUuccuaauaucuauacucgauuagcccuuuuccacccucaauuguggcuuauauauauaauauggagcauuuccaugggagaGCUCAAGAAAGCUGUGGGAGAccaugccacuuucaggacuuuuuga
(((((..(((((((((.(((...(((((((((((((((((.(((((((......((((....((.(((((..((........))..).)))).))...))))..(((((.....)))))))))))).)))))))))))))))))...))))))......)))))).)))))

Structure

     cu      ------   c   cua                 A       -----------aauauc    cucg  u    - uu  cca 
ucaga  aguccu      ggc aug   UUCCACAGCUUUCUUGA CUUuccu                 uaua    au agcc c  uu   c
|||||  ||||||      ||| |||   ||||||||||||||||| |||||||                 ||||    || |||| |  ||    
aguuu  ucagga      ccg uac   AGGGUGUCGAAAGAACU Gagaggg                 auau    ua ucgg g  aa   c
     -u      cuuuca   -   cAG                 C       uaccuuuacgagguaua    -aua  u    u uu  cuc 

Annotation confidence High

Genome context

Unknown

Mature lus-miR396b-5p

• Accession: MIMAT0027212
• Description: Linum usitatissimum lus-miR396b-5p mature miRNA
• Sequence: 24 - UUCCACAGCUUUCUUGAACUU - 44
• Evidence: not_experimental

Mature lus-miR396b-3p

• Accession: MIMAT0058430
• Description: Linum usitatissimum lus-miR396b-3p mature miRNA
• Sequence: 126 - GCUCAAGAAAGCUGUGGGAGA - 146
• Evidence: experimental ; unknown

References

1. PubMed ID: 23291876
   Genome-wide identification and characterization of microRNA genes and their targets in flax (Linum usitatissimum): Characterization of flax miRNA genes
   "Barvkar VT, Pardeshi VC, Kale SM, Qiu S, Rollins M, Datla R, Gupta VS, Kadoo NY"
   "Planta (2013) 237:1149-1161