Stem-loop lus-MIR408a

Accession

MI0021230

Description

Linum usitatissimum lus-MIR408a precursor miRNA

Literature search

3 open access papers mention lus-MIR408a
(14 sentences)

Sequence

161170 reads, 32646.0 reads per million, 24 experiments

gaucgaaagugaaaaacccgagguaagaaggaagacgagaaaaaaagaggCUGGGAACAGACAGAGCAUGGauagagcuuacuuacagaaacccuuuuguuuugacccuucccAUGCACUGCCUCUUCCCUGGCcuuuuucccucuucucuuccacccucuuuuucuuuuuugguc
(((((((((.((((((...((((......((((((.((((...((((((((((((((.((.(((.((((((..((.(.(((...((((((....))))))..))).)))..)))))).))).)).))))).)))))))))...)))).))))))..)))))))))).)))))))))

Structure

         u      ccc    uaagaa      c    aaa         -     C  A   A      au  a c   cuu      a 
gaucgaaag gaaaaa   gagg      ggaaga gaga   aaagaggCU GGGAA AG CAG GCAUGG  ag g uua   acagaa c
||||||||| ||||||   ||||      |||||| ||||   ||||||||| ||||| || ||| ||||||  || | |||   ||||||  
cugguuuuu cuuuuu   cucc      ccuucu uucu   uuuuucCGG CCCUU UC GUC CGUAcc  uc c agu   uguuuu c
         u      ---    ----ca      c    ccc         U     C  C   A      cu  - c   -uu      c 

Annotation confidence High

Genome context

Unknown

Mature lus-miR408a-5p

• Accession: MIMAT0058429
• Description: Linum usitatissimum lus-miR408a-5p mature miRNA
• Sequence: 51 - CUGGGAACAGACAGAGCAUGG - 71
• Evidence: experimental ; unknown

Mature lus-miR408a-3p

• Accession: MIMAT0027210
• Description: Linum usitatissimum lus-miR408a-3p mature miRNA
• Sequence: 114 - AUGCACUGCCUCUUCCCUGGC - 134
• Evidence: experimental ; qRT-PCR [1]

References

1. PubMed ID: 23291876
   Genome-wide identification and characterization of microRNA genes and their targets in flax (Linum usitatissimum): Characterization of flax miRNA genes
   "Barvkar VT, Pardeshi VC, Kale SM, Qiu S, Rollins M, Datla R, Gupta VS, Kadoo NY"
   "Planta (2013) 237:1149-1161